PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011102080.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NF-YB
Protein Properties Length: 182aa    MW: 20185.9 Da    PI: 8.4507
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011102080.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB178.46.6e-5643137397
           NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                      +drflPian++rimkk+lPan+ki+kdak+tvqecvsefisf+tseasdkcq+ekrktingddllwa+atlGfedy++plk+yl++yreleg++
  XP_011102080.1  43 LTDRFLPIANIGRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIAPLKAYLARYRELEGDT 137
                     58*******************************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.6E-5142149IPR009072Histone-fold
SuperFamilySSF471131.34E-3945147IPR009072Histone-fold
PfamPF008089.3E-2947111IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.1E-197593No hitNo description
PROSITE patternPS0068507894IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.1E-1994112No hitNo description
PRINTSPR006151.1E-19113131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MRFYGFSSCL SFRFLDAVTV CYYPWCSTSS VGLSMITKTI QRLTDRFLPI ANIGRIMKKA  60
LPANGKIAKD AKDTVQECVS EFISFITSEA SDKCQKEKRK TINGDDLLWA MATLGFEDYI  120
APLKAYLARY RELEGDTKGP ARGADGSAKK DTIGTQLGSD AQFAHQGSFS QGFSYSNSQI  180
EY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B2e-4342132494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A2e-4342132494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011102080.11e-134PREDICTED: nuclear transcription factor Y subunit B-1-like
SwissprotQ67XJ23e-71NFYBA_ARATH; Nuclear transcription factor Y subunit B-10
TrEMBLA0A0N6X6V52e-92A0A0N6X6V5_SALMI; Transcription factor NFYB
STRINGVIT_13s0019g03600.t016e-79(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.12e-72nuclear factor Y, subunit B10